The PNAAssay class

The PNAAssay object is an extended Assay for storing PNA single-cell data.

Details

Compared to the Assay class, the PNAAssay class has three additional slots:

• cellgraphs: A named list of CellGraph objects

• proximity: A tbl_df with proximity scores

• fs_map: A tbl_df with information on source PXL file

Slots

cellgraphs

A named list of CellGraph objects

proximity

A tbl_df with proximity scores

fs_map

A tbl_df with information on source PXL file paths, sample IDs, and component IDs