Compute partition counts — partition_counts • pixelatorR

Compute partition counts

Usage

partition_counts(cg, partition = NULL, partition_column = NULL)

Arguments

cg: A CellGraph object containing the cell graph and count data.
partition: A character or factor vector indicating the partition of nodes into groups. Either partition or partition_column must be provided.
partition_column: A string indicating the name of the vertex attribute in the cell graph that contains the partition information.

Value

A matrix of counts for each partition group, where rows correspond to partition groups and columns correspond to features (e.g., proteins).