Type check helpers — type-checks • pixelatorR

Utility functions for type checking in pixelatorR. These functions throw informative error messages if the checks fail.

Usage

assert_single_value(
  x,
  type = c("string", "numeric", "integer", "bool"),
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_vector(
  x,
  type = c("character", "numeric", "integer", "logical"),
  n = 2,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_class(
  x,
  classes,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_mpx_assay(
  x,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_pna_assay(
  x,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_pixel_assay(
  x,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_within_limits(x, limits, arg = caller_arg(x), call = caller_env())

assert_function(
  x,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_file_exists(x, allow_null = FALSE, call = caller_env())

assert_file_ext(x, ext, allow_null = FALSE, call = caller_env())

assert_x_in_y(
  x,
  y,
  allow_null = FALSE,
  arg_x = caller_arg(x),
  arg_y = caller_arg(y),
  call = caller_env()
)

assert_single_values_are_different(
  x,
  y,
  allow_null = FALSE,
  arg_x = caller_arg(x),
  arg_y = caller_arg(y),
  call = caller_env()
)

assert_singles_match(
  x,
  y,
  arg_x = caller_arg(x),
  arg_y = caller_arg(y),
  call = caller_env()
)

assert_length(
  x,
  n = 1,
  allow_null = FALSE,
  arg_x = caller_arg(x),
  call = caller_env()
)

assert_max_length(
  x,
  n = 1,
  allow_null = FALSE,
  arg_x = caller_arg(x),
  call = caller_env()
)

assert_vectors_x_y_length_equal(
  x,
  y,
  arg_x = caller_arg(x),
  arg_y = caller_arg(y),
  call = caller_env()
)

assert_unique(x, arg = caller_arg(x), call = caller_env())

assert_col_class(
  x,
  data,
  classes,
  allow_null = FALSE,
  arg_data = caller_arg(data),
  call = caller_env()
)

assert_col_in_data(
  x,
  data,
  allow_null = FALSE,
  arg_data = caller_arg(data),
  call = caller_env()
)

assert_non_empty_object(
  x,
  classes,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_is_one_of(
  x,
  choices,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

assert_different(
  x,
  y,
  allow_null = FALSE,
  arg_x = caller_arg(x),
  arg_y = caller_arg(y),
  call = caller_env()
)

assert_vectors_match(
  x,
  y,
  allow_null = FALSE,
  arg_x = caller_arg(x),
  arg_y = caller_arg(y),
  call = caller_env()
)

assert_valid_color(
  x,
  n = 1,
  allow_null = FALSE,
  arg = caller_arg(x),
  call = caller_env()
)

Arguments

x, y: An object to check
type: A character string specifying the type or vector class to check against.
allow_null: Either TRUE or FALSE. If TRUE, x can be NULL and the check passes.
arg, arg_x, arg_y, arg_data: The name of an argument to check. Used for error messages.
call: An environment, typically the environment in which the function was called
n: An integer
classes: A character vector of classes to check against
limits: A numeric vector of length 2 specifying a lower and upper limit
ext: A character string specifying a file extension
data: A data-frame like object
choices: A vector of allowed values

Value

Nothing if the check passes, otherwise throws an error.

Details

assert_single_value checks if x is a single value of a specified type.
assert_vector checks if x is a vector of a specified type and with at least n elements.
assert_class checks if x is of a specific class.
assert_mpx_assay checks if x is a CellGraphAssay or CellGraphAssay5.
assert_pna_assay checks if x is a PNAAssay or PNAAssay5.
assert_pixel_assay checks if x is a CellGraphAssay, CellGraphAssay5, PNAAssay or PNAAssay5.
assert_x_in_y checks if all elements of x are in y.
assert_single_values_are_different checks if x and y are not different strings.
assert_col_class checks if column x in data is of a specific class.
assert_col_in_data checks if column x is present in data.
assert_vectors_match checks if vectors x and y are identical.
assert_length checks if vector x has a specific length.
assert_within_limits checks if values in x are within limits.
assert_function checks x is a function.
assert_file_exists checks is file x exists.
assert_file_ext checks is file x has file extension ext.
assert_unique checks if values in x are unique.