ColocalizationScores — ColocalizationScores • pixelatorR

Get and set colocalization scores for a CellGraphAssay, CellGraphAssay5 or a Seurat object

Usage

ColocalizationScores(object, ...)

ColocalizationScores(object, ...) <- value

# S3 method for MPXAssay
ColocalizationScores(object, ...)

# S3 method for MPXAssay
ColocalizationScores(object, ...) <- value

# S3 method for Seurat
ColocalizationScores(object, assay = NULL, meta_data_columns = NULL, ...)

# S3 method for Seurat
ColocalizationScores(object, assay = NULL, ...) <- value

Arguments

object: An object with polarization scores
...: Not implemented
value: A tbl_df with colocalization scores
assay: Name of a CellGraphAssay
meta_data_columns: A character vector with meta.data column names. This option can be useful to join meta.data columns with the polarization score table.

Value

ColocalizationScores: Colocalization scores

ColocalizationScores<-: An object with colocalization scores updated

See also

Other spatial metrics: PolarizationScores()