Edge Rank Plot — MoleculeRankPlot • pixelatorR

Plots the number of edges/molecules per component against the component rank

Usage

MoleculeRankPlot(object, ...)

# S3 method for data.frame
MoleculeRankPlot(object, group_by = NULL, ...)

# S3 method for Seurat
MoleculeRankPlot(object, group_by = NULL, ...)

Arguments

object: A data.frame-like object or a Seurat object
...: Parameters passed to other methods
group_by: A character specifying a column to group by

Value

A ggplot object

Examples


library(pixelatorR)

# Load example data as a Seurat object
pxl_file <- system.file("extdata/five_cells",
                        "five_cells.pxl",
                        package = "pixelatorR")
seur_obj <- ReadMPX_Seurat(pxl_file)
#> ✔ Created a 'Seurat' object with 5 cells and 80 targeted surface proteins
seur_obj
#> An object of class Seurat 
#> 80 features across 5 samples within 1 assay 
#> Active assay: mpxCells (80 features, 80 variable features)
#>  2 layers present: counts, data

# Plot with data.frame
MoleculeRankPlot(seur_obj[[]])


library(pixelatorR)

# Plot with Seurat object
MoleculeRankPlot(seur_obj)